Table 11

Proportions of differentially expressed genes associated or not associated with INDELs are significantly different

Tissue type

DE genes with INDELs/total genes with INDELs (%)

DE genes with non-INDELs/total genes with non-INDELs (%)

Proportions test (P-value)

Brain

2,266/2,266 + 2,153 (51%)

4,618/4,618 + 5,096 (48%)

4.054E-05

Testis

3,438/3,438 + 1,256 (73%)

7,365/7,365 + 3,386 (69%)

3.93E-09

Heart

2,233/2,233 + 1,948 (53%)

4,610/4,610 + 4,706 (5%)

2.7E-05

Liver

1,696/1,696 + 2,466 (41%)

3,612/3,612 + 5,910 (38%)

0.0019

Kidney

2,179/2,179 + 2,144 (5%)

4,410/4,410 + 5,326 (45%)

2.35E-08

DE = differentially expressed; INDEL = insertion and deletion. Proportions for all INDELs across all tissues examined are shown.

Polavarapu et al. Mobile DNA 2011 2:13   doi:10.1186/1759-8753-2-13