Table 1 |
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|
Characteristics of Hebe copies. |
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|
Copy |
No. of fosmids |
Stop codon |
5' truncation |
3' truncation |
Internal deletion |
Genomic environment |
|
|
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|
A |
4 |
- |
- |
- |
- |
Tandem repeats |
|
B |
2 |
- |
- |
- |
- |
Leucine rich repeat protein |
|
C |
1 |
? |
? |
- |
- |
No significant hits |
|
D |
2 |
+ |
- |
- |
- |
DNA TE, piggyBac-like |
|
E |
3 |
- |
- |
- |
- |
No significant hits |
|
F |
6 |
+ |
- |
+ |
+ |
Tandem repeats (=G) |
|
G |
6 |
+ |
- |
- |
+ |
Tandem repeats (=F) |
|
H |
2 |
+ |
- |
+ |
+ |
TPR protein |
|
I |
4 |
? |
? |
- |
- |
Kelch repeat; Fungal ORF |
|
J |
3 |
- |
- |
- |
+ |
TPR repeat protein |
|
K |
2 |
- |
- |
+ |
- |
Telomere; telomeric repeats |
|
L |
2 |
- |
- |
+ |
+ |
LTR TE (=M) |
|
M |
1 |
- |
- |
+ |
+ |
LTR TE (=L) |
|
N |
1 |
? |
? |
- |
+ |
No significant hits |
|
O |
4 |
- |
- |
+ |
+ |
Telomeric repeats |
|
|
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|
See Additional File 2 for sequences of copies A-O. ?, copies truncated by cloning. TE, transposable element; TPR, tetratricopeptide repeat; ORF, open reading frame; LTR, long terminal repeat. |
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|
Gladyshev and Arkhipova Mobile DNA 2010 1:12 doi:10.1186/1759-8753-1-12 |
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