Table 5 |
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|
Sadhu elements >350 base pairs (bp) in the Arabidopsis lyrata genome. |
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|
Sequence name |
JGI scaffold coordinates (approximate) |
Orientation |
Length (bp) of Sadhu sequence |
Target site duplication (bp) |
Full length? |
Percentage identity to nearest A. thaliana Sadhu |
|
|
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|
AlSadhu1-1 |
7:7309496-7310418 |
- |
948 |
18 |
Yes |
86 |
|
AlSadhu1-2 |
8:11697563-11698467 |
+ |
922 |
12 |
Yes |
86 |
|
AlSadhu1-3 |
6:22517373-22518173 |
+ |
957 |
14 |
Yes |
84 |
|
AlSadhu1-4 |
3:1662010-1662618 |
- |
1009 |
14 |
Yes |
81 |
|
AlSadhu1-5 |
1:24954753-24955365 |
+ |
924 |
ND |
Yes |
84 |
|
AlSadhu1-6 |
4:841417-842023 |
+ |
965 |
16 |
Yes |
82 |
|
AlSadhu1-6 |
3:13675822-13676434 |
+ |
927 |
16 |
Yes |
84 |
|
AlSadhu1d |
2:14298861-14299465 |
+ |
827 |
ND |
No |
81 |
|
AlSadhu3-1 |
7:12620425-12621361 |
+ |
928 |
18 |
Yes |
86 |
|
AlSadhu5-1 |
7:17697122-17698008 |
+ |
879 |
11 |
Yes |
85 |
|
AlSadhu5d |
6:5062639-5062768 |
- |
791 |
ND |
No |
72 |
|
AlSadhu5d2 |
6:25041036-25041746 |
+ |
804 |
ND |
No |
73 |
|
AlSadhu5d3 |
5:4156620-4157046 |
- |
395 |
ND |
No |
71 |
|
AlSadhu6-1 |
3:21898960-21899646 |
- |
899 |
14 |
Yes |
77 |
|
AlSadhu6-2 |
2:14183205-14186662 |
+ |
887* |
15 |
Yes |
77 |
|
AlSadhu6-3 |
8:5795744-5796493 |
+ |
927 |
ND |
Yes |
78 |
|
AlSadhu7-1 |
7:4360460-4360769 |
- |
901 |
16 |
Yes |
79 |
|
AlSadhu8-1 |
1:13276396-13277158 |
- |
920 |
13 |
Yes |
77 |
|
AlSadhu8-2 |
3:807549-808169 |
+ |
865 |
ND |
Yes |
79 |
|
AlSadhu8-3 |
2:25942-26642 |
+ |
908 |
8 |
Yes |
77 |
|
AlSadhu8-4 |
8:14602238-14602861 |
+ |
875 |
15 |
Yes |
75 |
|
AlSadhu8-5 |
7:17882685-17884241 |
+ |
930** |
ND |
Yes |
78 |
|
AlSadhu8-6 |
6:17227119-17227908 |
- |
910 |
ND |
Yes |
77 |
|
AlSadhu10-1 |
3:4473616-4474232 |
+ |
918 |
17 |
Yes |
80 |
|
AlSadhu10-2 |
2:9675105-9675721 |
+ |
895 |
ND |
Yes |
80 |
|
|
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|
*interrupted by 2,028 nt non-Sadhu sequence; **Interrupted by 518 nt non-Sadhu sequence; bp = base pairs; JGI = Joint Genome Institute; ND = not detected; nt = nucleotides. |
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|
Rangwala and Richards Mobile DNA 2010 1:10 doi:10.1186/1759-8753-1-10 |
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